rituparna-13

Hello Daniel, There are 194 fastq files as input and the read length is 100.

Hi Daniel, I am commenting here again since I did not hear back from you. Please let me know if you need more information.

Hi Daniel, I see. Thank you so much for letting me know. Thanks, Ritu

Thank you, Jack for answering all my questions!

Hi Jack, I ran SCITE on our dataset with 500 cells and 200 mutations with the # of iterations set as 1. I found out that the time it took...

Hi Jack, I apologize for the confusion. I used the following command to run SCITE on our dataset: scite -i input_t8_rep1.D.csv -n 200 -m 500 -r 1 -l 1565000 -fd...

Hi Jack, Thank you for the detailed explanation of the parameters. I am able to run SCITE much faster after compiling it with -O3. This is very helpful! Thanks, Ritu

Hi Jack, I am using the `-a` option to get the cells attached to the leaf nodes because I want to get the clones with the cells. I noticed that...

Thank you for answering my question!