ritikakundra

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A cancer_type.txt file of all cancer types for cBioportal?

@wangshun1121 portal accepts any OncoTree code for cancer type. You can get a data dump of oncotree via its API https://oncotree.mskcc.org/swagger-ui.html

Data issue for study: mbn_sfu_2023

Closing this issue since it looks like its fixed. Please open back if its still an issue @saxenanurag

Curate Pediatric pancancer PCGP study

Maybe this paper is associated with this https://www.nature.com/articles/nature25795#Sec1

Data issue for study: crc_hta11_htan_2021

Closing this issue. @saxenanurag please reopen if you still find any issues.

Add a FAQ section

Sure @NishchayRajput, how do you plan to go about it?

Update nfosi jhu dataset

@anngvu is this for private access?

Update nfosi jhu dataset

@jaybee84 We are just wrapping up it up. We will have the link ready by tomorrow morning.

July- Public Release Studies

https://private.cbioportal.mskcc.org/study/summary?id=mixed_msk_tcga_2021: - [x] So this is germline study from MSK-IMPACT? The IDs are all different. Can we confirm these are not part of the main impact series? _***The samples are...

July- Public Release Studies

https://private.cbioportal.mskcc.org/study/summary?id=gist_msk_2023: - [x] Can institute source be normalized - [x] Race is also all upper case **_*Following points are pending author response. Followed back with author and still no response...

July- Public Release Studies

https://private.cbioportal.mskcc.org/study/summary?id=brca_fuscc_2020: - [x] The supp file has so much more clinical info. Why is that not part of the cohort?