ritikakundra
ritikakundra
- [x] Paper is not mentioned in the title - [x] I am seeing OS status twice in the clinical file. Is that a bug or data issue? _maybe bug,...
I see this is ticked Can we add mutational signatures as generic assay? I cant see them
- [x] description numbers don't match portal numbers which don't match the paper - [x] Only 85% of samples were sequenced? Not all? 85% samples have WES, 984 out of...
- [x] The paper is Nature Genetics not Nature - [x] Should we change the title to MBN since it consists of both samples? _Is this for mbn_sfu_2023? Already changed....
One final check on if the genomic data was properly mapped.
- [x] Meta study needs to be redone to follow our convention. - [x] DepMap needs to be added as a source - [x] Can we distinguish between WGS and...
@MatthijsPon can we get the reference for the mutational signature computing ?
Portal is now showing the right transcript.
- [x] Study ID should not be called mixed, change to sarcoma_... - [x] There is no Cancer Type or Cancer Type Detailed. If not in the paper, use Final...
sarcoma_msk_2022: - [x] Description does not include normals _No matched normal tissue_ - [x] What was used to define OncoTree codes? Orignal or corrected. Whichever was used should be defined...