IPO
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rietho
A Tool for automated Optimization of XCMS Parameters
I used the official code and it ran successfully, but it didn't work when I switched to the **cdf** file I used for my experiment. Earlier I asked the developers...
Hello, since a few weeks, I have an error that appear during xcms optimisation of peak picking parameters. the following error is appearing at some point "seems random" but it...
Hello, I am facing this issue with the IPO where it is taking a lot of time to complete the iteration. The files which we are using are acquired on...
Hello, Despite the claim [here](https://www.bioconductor.org/packages/release/bioc/vignettes/IPO/inst/doc/IPO.html) that only obiwarp and density are supported for optimizing RT correction and grouping, issue #36 and others suggest that is no longer the case. I...
Hi, I am trying ot use IPO on 15 files on a cluster to speed up the process. However IPO keep crashing on our cluster. I tried 16 cores with...
I am running IPO on a set of 200 + samples (and will have a set of 1800 + later). So, the parallelizing options are very important. However, the IPO...
Sorry to ask this question but I'm a bit lost in parallel computing ... Could somebody explain the ratio between workers and slaves for running IPO optimally ? I have...
I am getting a `std::bad_alloc` error when I run `optimizeRetGroup`. I have 995G of ram on my machine and when I watch in htop it never goes over 12G so...
Hello, Recently I started delving in the (very interesting!) IPO package. By pure coincidence I noticed that during a test run the final results were not optimal. Reproducible example: ```R...
Hi, I've just started IPO recently to analyze non targeted LC/qTOF/MS data (mzXML files). Unfortunately, I got issue at the first step. The script is as below: ``` data
