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Error in resultIncreased(history) : No isotopes have been detected, peak picking not optimizable by IPO!
I used the official code and it ran successfully, but it didn't work when I switched to the cdf file I used for my experiment.
Earlier I asked the developers at xcms
that they might have some problems with xcmsSet
, so I'm not sure it's me now.
The problem with the cdf file is still a problem with the IPO
package or there is still a problem with xcms
.
The following is my error message:
Error in resultIncreased(history) :
No isotopes have been detected, peak picking not optimizable by IPO!Timing stopped at: 2313 1112 647.5
> traceback()
4: stop(paste("No isotopes have been detected,", "peak picking not optimizable by IPO!"))
3: resultIncreased(history)
2: optimizeXcmsSet(files = datafiles, params = peakpickingParameters,
nSlaves = 1, subdir = NULL, plot = F) at #2
1: system.time({
resultPeakpicking <- optimizeXcmsSet(files = datafiles, params = peakpickingParameters,
nSlaves = 1, subdir = NULL, plot = F)
})