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                                            Dietmar Rieder

WGS processing running out of space

Closing due to inactivity, please feel free to reopen.

pVACtools_generate_protein_seq error exit status (1)

Hi, can you try with the newly released version 1.5.0. If it still fails, please make sure that the `Frameshift.pm` and `Wildtype.pm` are installed (should be done automatically) in `resources/databases/vep_cache/Plugins`.

pVACtools_generate_protein_seq error exit status (1)

Closing due to inactivity, please feel free to reopen.

hide-modulefile is currently ignored

True, but I'm proposing a "solution" ;-) However, since I'm new to Lmod, I don't really know if my "solution" is breaking something else.

gatk PreprocessIntervals failing

Hi, I assume you are using WGS not WES data. If son, can you try the latest version, I reverted the changes that create the intervals for WGS which may...