Dietmar Rieder
Dietmar Rieder
Hi, if you need to run `HLA-HD` you will also need to provide `bowtie2` which needs to be accessible via `$PATH`. Thanks for letting us know that `HLA-HD` still exits...
we recommend to run the pipeline using singularity `-profile singularity`, did you try this? With conda or local installation of the tools we see such problems.
I'm assuming this to be solved.
Hi, 1. The mixcr license file needs to be passed to the `nextNEOpi` pipeline via `--MIXCR_lic /path/to/yourwonderful/mi.licence` and it should look like: ``` $ cat mi.license | tr '[A-Z]' 'X'...
no feedback. I'm closing the issue for now, please feel free to open it again
Yeah basically yes, I did run an ablation analysis and looked at the `-trace` output to identify possible places where we can try to refresh the metadata.
I understand, in my tests the number of syncs/directory listings was roughly corresponding the number of submitted jobs (21k jobs ~ 20k refresh), we did not see any network issues....
Missed that, will try and report back Thanks
To be honest, I did not test it yet, it is still on my list
Sorry for the late reply: Can you try with the newly released version 1.5.0