Adam Richie-Halford

Results 18 comments of Adam Richie-Halford

For preprocessed fMRI, I'm not aware of any released work on this. But for preprocessed DWI and tractometry outputs, @adswa and I are working on DataLaddifying https://www.biorxiv.org/content/10.1101/2022.02.24.481303v1

> @smeisler and @jsmentch have a datalad dataset for hbn. we need to do a bit more curation and then i will post the dataset on some repo. @satra ,...

> Our approach right now is using the aws s3 client to list files and then hand them to `addurl` > > > I hope that that dataset scale is...

Can I solicit some help here with my HBN datalad dataset. I'm making a datalad dataset for the HBN-POD2 project, encompassing the data at `s3://fcp-indi/data/Projects/HBN/BIDS_curated` with the derivative QSIPrep and...

The curated BIDS, QSIPrep outputs, and pyAFQ output combined come out to 3.3 TiB as verified by ``` aws s3 ls s3://fcp-indi/data/Projects/HBN/BIDS_curated --recursive --human-readable --summarize ``` The QSIPrep outputs alone...

@mih Thanks for your quick reply! I tried your suggestion and I think we have progress but not success. I can now `datalad get` various participants, e.g., ``` > datalad...

@fabianp, Thanks for developing copt! Please feel free to cannibalize the code you referenced above. Or if you're open to it, I'm also happy to submit a PR with it.

While we're at it, we should record the session ID in the `dwiqc.json` report.

I was thinking about implementing this using git hooks with a script that goes something like: ``` bash #!/bin/sh ZIP_FILE=python-novice-inflammation-data.zip DATA_DIR=data zip --filesync --recurse-paths $ZIP_FILE $DATA_DIR ``` Ideally, this would...

For that matter, would the maintainers (@tbekolay and @abostroem) like `make preview` to be put in a client-side hook of some sort. My first reaction was that if you are...