Richard Zhang

icon indicating an email [email protected]

icon company Princeton University icon location PhD student in the QCB program at Princeton, co-supervised by Michelle Chan and Benjamin Raphael. Formerly supervised by Nir Yosef.

Results 3 issues of Richard Zhang

Generalizing 'collapse_mutationless_edges' and small fitchcount bugfix

1 comment

This pull request includes the generalization of the `collapse_mutationless_edges` function. This allows us to use a function that does not factor in missing data when determining whether to collapse two...

bug
enhancement

Triplets Correct and RF functions both mutate the underlying tree

From the following code snippet, we see that even though the cached edges do not change, the underlying backend networkx object has changed, with the singleton edge at the top...

bug

added STDR wrap-around

Hi Matt, here's what I have for the STDR wrap-around currently. It's not thoroughly documented, so I'll work on that.

enhancement