richard-burhans

Added the ability for SegAlign to read and use a lastz scoring file. Before it would pass the scoring file to lastz, but it would not use the substitution scores...

Fix _JAVA_OPTIONS breaking launch exactly like issue #1716

5

Just like in #1716, the _JAVA_OPTIONS variable results in messages like: ``` Picked up _JAVA_OPTIONS: -Djava.io.tmpdir=/tmp -Xmx221184m -Xms256m CAPSULE EXCEPTION: Could not parse version line: Picked up _JAVA_OPTIONS: -Djava.io.tmpdir=/scratch/03166/xcgalaxy/main/staging/59941234/tmp -Xmx221184m...

set limit for ncbi_egapx to 48 hours

Add genodsp

4

Adding genodsp -- General workbench for processing signals along genomic intervals ---- Please read the [guidelines for Bioconda recipes](https://bioconda.github.io/contributor/guidelines.html) before opening a pull request (PR). ### General instructions * If...

Add ncbi egapx

1

Adding NCBI Eukaryotic Genome Annotation Pipeline - External (EGAPx) FOR CONTRIBUTOR: * [X] I have read the [CONTRIBUTING.md](https://github.com/galaxyproject/tools-iuc/blob/master/CONTRIBUTING.md) document and this tool is appropriate for the tools-iuc repo. * [X]...