iAnnotateSV
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rhshah
iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Generation DNA sequencing data.
Bumps [pillow](https://github.com/python-pillow/Pillow) from 6.2.1 to 10.0.1. Release notes Sourced from pillow's releases. 10.0.1 https://pillow.readthedocs.io/en/stable/releasenotes/10.0.1.html Changes Updated libwebp to 1.3.2 #7395 [@radarhere] Updated zlib to 1.3 #7344 [@radarhere] 10.0.0 https://pillow.readthedocs.io/en/stable/releasenotes/10.0.0.html Changes...
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Bumps [reportlab](http://www.reportlab.com/) from 3.5.42 to 3.6.13. [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a...
**Issue encountered when running iAnnotateSV. Failed sample C-HAT9MW-L002-d02 in Project 13893_F.** Lines that are failing iAnnotateSV with the error mentioned below: chr1 | pos1 | str1 | chr2 | pos2...
Thanks for this really nice tool! I was wondering if there are any recommendations for filtering tumor variants after they are annotated. It has been suggested by a colleague to...
Bumps [codecov](https://github.com/codecov/codecov-python) from 2.0.5 to 2.0.16. Changelog Sourced from codecov's changelog. 2.0.16 fixed reported command injection vulnerability. 2.0.15 add -X s3 to disable direct to S3 uploading 2.0.14 fixed coverage...
Bumps [numpy](https://github.com/numpy/numpy) from 1.16.5 to 1.22.0. Release notes Sourced from numpy's releases. v1.22.0 NumPy 1.22.0 Release Notes NumPy 1.22.0 is a big release featuring the work of 153 contributors spread...
Hi, I found multiple coordinates for a transcript in hg19.sv.table.txt, such as NM_001037501, and it will cause an error in processData() function within AnnotationForKinaseDomain.py, like this: ```Traceback (most recent call...
