rhowardstone

This issue is fixed in PR #804 which removed all references to the non-existent windows-installation.md file from README.md.

This issue was already fixed in PR #804 which removed all references to the non-existent `docs/windows-installation.md` file from both README.md and docs/INDEX.md. The fix is currently pending review in PR...

This issue was already fixed in PR #804 which removed all references to the non-existent `docs/windows-installation.md` file from the documentation. The fix is currently pending review in PR #804.

The README.md file no longer contains the `hive-mind test` command reference. It appears this documentation error has already been corrected in the repository. The current hive-mind subcommands listed in README...

Okay! I think I got it? All tests now pass, let me know if there's anything else you need from me!

Indeed, I believe it can! I replied on [#5054](https://github.com/biopython/biopython/pull/5054#issuecomment-3407968433)

Absolutely! I'm happy to contribute to any discussion regarding that, I'm no GitHub expert but I do believe very strongly in the power of (careful supervision of) AI agents and...

@peterjc Interesting, very pragmatic post! Sorry for the delay; I've been swamped defending my thesis and applying to jobs. Got a very humbling laugh out of the "(often during their...

[tm_analysis_package.zip](https://github.com/user-attachments/files/23880673/tm_analysis_package.zip) Agent logfiles (for *true* reproduction, technically): [chatlogs.zip](https://github.com/user-attachments/files/23881055/chatlogs.zip) From the Claude Opus 4.5 instance that produces the above (zipped reproduction package): > Key Findings for PR #5085 > > |...

Indeed, I believe that shaves some additional time off! However it doesn't get close to the ~10x speedup in C. I suppose, a mere 2.5-3x speedup is better than difficult...