Rayan Hassaïne

### Description of the bug Hi everyone, When trying to use the nf-core pipelines launch from the command line, I get the following error [nf_core_launch_pipelines_error.txt](https://github.com/user-attachments/files/17364223/nf_core_launch_pipelines_error.txt) ### Command used and terminal...

Enhancement/orange w o virus

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## PR checklist - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should be tested,...

Enhancement/adding unit testing

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## PR checklist Adding nf-tests on the module-level to meet nf-core requirements - [X] This comment contains a description of changes (with reason). - [X] If you've fixed a bug...

Feat/hmf reference download

2

## PR checklist - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should be tested,...

Implemented circos flag for purple

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Implemented circos flag for purple - default set to true Can be modified through config or cli arg Updated config, schema and module ## PR checklist - [X] This comment...

Allowed flowcell as entry in info field of samplesheet w/ FASTQ

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Add flowcell as a valid entry in the info field of the samplesheet when starting from FASTQ Use case: very useful when samples have been sequenced more than once