Rick Farouni

Hi, Why do I need the `.fa` file if the sequence is already is in gbff? Currently I need to unzip and convert the Genebank file before I run this...

Pytorch implementation

4

Thanks for your great contribution. I really enjoyed reading the paper. I hope you do not mind me asking, but are there any plans for implementing the code in Pytorch?...

Python 3.5 compatibility

3

Hi, Can I run parmesan using Python 3.5? Although I am able to run Lasagne, I get this error when I try to run the example ``` python python examples/iw_vae.py...

dgCMatrix_colSums' not found error when using a binary matrix

1

Hi, On a binary matrix, the _umap_ function gives me this error  when I set _init="pca",_ I no longer get the error. I think the bug...

Computing observational weights in the zinbwave function using a sparse matrix

5

Hi, When I try to compute the observational weights using by supplying a fitted model object to the zinbwave function ```zinbwave(sce10x, fitted_model = zinb, K = 0,observationalWeights = TRUE)``` I...

Loading sparse matrix or anndata object

1

Hi, Is loading a sparse matrix or anndata object functionality in the works? https://anndata.readthedocs.io/en/stable/ Thanks!