Rick Farouni

Should be sufficient. That said, at one step of the pipeline a measure of signal variability is computed to determine the hotspot regions, but with a small sample size (e.g....

An update to pandas is causing this. I am not sure if it is a cause of worry, but to be on the safe side, I would pin the version...

I have no experience building Singularity containers but I think it would be a great solution for people running the pipeline on HPC clusters. Maybe @lucapinello knows more about these...

@lucapinello I will look into this as soon as I can

I found that the easiest way to deal with this error is to run `conda install pandas==0.21` after running `conda install haystack_bio`. The test runs fine after that. ```WARNING @...

This seems to work as well

As of yet, it does not handle replicates. You would need to merge them. Of course you can also treat the 3 replicates as different cell types and merge the...

The problem is probably due to the lastest numpy or pandas update. I would use the docker container or create an environment that forces these packages to have earlier versions...