Alireza Khodadadi-Jamayran
Alireza Khodadadi-Jamayran
Yes, read this issue: https://github.com/rezakj/iCellR/issues/19
You can, but the only thing is that iCellR identifies the conditions in the barcode/cell id (column names in the main.data slot and row names in the tSNE data). A...
Almost all the plots in iCellR are ggplot2. So just make the plot object like this: `My.plot
2 ways to do this; if you don't want to filter cells: ` [email protected]
Hi Yale, Thank you, yes! It's the general r "cor.test" function that by default takes "pearson". Thanks for reminding me, I will add the option to change methods in the...
It would be the reverse way of converting from Seurat to iCellR. Read this thread: https://github.com/rezakj/iCellR/issues/19
Hi guys, I am a bit busy but soon will look into this. But for now, I think it's important to know that the vdj analysis is mostly about plotting...
Hi, this function scales the normalized data but it dose not replace it (puts it in another data slot). Therfore, this function is really un-necessary because all the downstream funtions...
You have 19 columns. If it was single cell data it would be 19 cells. I don't recomend running KNetL map on small data. Generally it dose better when you...
Hi, not yet wait for version 1 (in March 2019 ish). We are also migrating the whole thing with better functionalities to iCellR (https://github.com/rezakj/iCellR).