rezahay

Getting PSSMs from the msa output of mmseqs

2

Dear all, Does MMSeqs2 provide a way (a command) to generate PSSM profiles from the MMSeqs2 multiple sequence alignment (msa) output file out.mm_msa? I think providing such a functionality can...

Brief description of output columns?

3

Thanks a lot for this wonderful tool. Unfortunately, I couldn't find a brief description of the output format. The output I have downloaded misses column headers. So, I don't know...

According to Richard, the cause of the XmlXPathReader problem, which is explained below, is as follows: "It looks like the processNode() method in XmlXPathReader expects the nodes selected by PARAM_XPATH_EXPRESSION...

Dear Fabio, Thank you very much for these wonderful webservice clients. We (at the VU University of Amsterdam) would like to use the webservice client for PSI-Blast to retrieve PSSMs....