Philipp Resl

Hi everyone, very interesting discussion going on here. I have also been using funannotate in a snakemake pipeline and had problems with temp directories at some point. For me this...

Hi everyone, I also spent some time on creating a Docker/Singularity container for funannotate. It is available here: `https://github.com/reslp/funannotate-docker`. I have been using it quite a bit lately and it...

Which funannotate image are you using @Xueliang24? The one I created does not include eggnog mapper or GeneMark so @hyphaltip is correct. However I don't think that this would cause...

Hi, thank you for your quick reply! There is no difference in the output of the two commands on the different hosts. I should have mentioned that already in my...

Hi, This is getting more and more mysterious. I just tried it with several files and they all failed on my mac. Then I downloaded an Aspergillus genome from NCBI...

Thank you, I just tried your script and it did not give any output, so it does not seem to find any problematic lines. I uploaded the problematic file I...