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Exclude some biotoolsIDs from id checking

Open hansioan opened this issue 5 years ago • 3 comments

@matuskalas @bgruening @hmenager @joncison Please provide some links to the resources that have biotoolsIDs which cannot be changed, so when I go through and verify the existing biotoolsIDs I can exclude these from the check

Thanks

hansioan avatar Jan 30 '20 11:01 hansioan

Bioconda:

  • [ ] https://github.com/bioconda/bioconda-recipes/tree/master/recipes
  • [ ] https://github.com/matuskalas/bioconda-recipes/tree/add_extra_ids/recipes

Debian:

  • [ ] https://blends.debian.org/med/tasks/bio
  • [ ] https://blends.debian.org/med/tasks/bio-dev
  • [ ] https://blends.debian.org/med/tasks/bio-ngs
  • [ ] https://blends.debian.org/med/tasks/bio-phylogeny
  • [ ] https://blends.debian.org/med/tasks/cloud
  • [ ] https://blends.debian.org/med/tasks/statistics

Galaxy:

  • [ ] https://github.com/matuskalas/tools-iuc/tree/edam1_23_biotools_ids/tools
  • [ ] @hmenager please add, thanks!

matuskalas avatar Jan 30 '20 11:01 matuskalas

It would also be extremely valuable, in case you'll be greping lists of the biotoolsIDs in those resources, to share those lists (or even scripts) somewhere somehow. Million thanks @hansioan 🥇

matuskalas avatar Jan 30 '20 11:01 matuskalas

@matuskalas I assume your fork of the Bioconda recipes has some extra ids which will eventually get in the main Bioconda recipes.

~~The Debian lists only have HTML websites? No API?~~ (DONE with HTML parsing )

In the repo: https://github.com/matuskalas/tools-iuc/tree/edam1_23_biotools_ids/tools what are the biotoolsIDs? Are the ids the same as the folder names?

hansioan avatar Feb 10 '20 13:02 hansioan