colord
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ARM Architecture Support (Apple Silicon)
Hello!
I tried to run this tool with M1 MacBook on Mac OS. Unfortunately, it did not work.
Installation via conda install -c bioconda colord
shows error:
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
PackagesNotFoundError: The following packages are not available from current channels:
- colord
Current channels:
- https://conda.anaconda.org/bioconda/osx-arm64
- https://conda.anaconda.org/bioconda/noarch
- https://repo.anaconda.com/pkgs/main/osx-arm64
- https://repo.anaconda.com/pkgs/main/noarch
- https://repo.anaconda.com/pkgs/r/osx-arm64
- https://repo.anaconda.com/pkgs/r/noarch
- https://conda.anaconda.org/conda-forge/osx-arm64
- https://conda.anaconda.org/conda-forge/noarch
To search for alternate channels that may provide the conda package you're
looking for, navigate to
https://anaconda.org
and use the search bar at the top of the page.
I decided to try to compile it by myself. brew install gcc@10
also leads to the error:
(base) alexey@Alexeys-MacBook-Pro:~$ brew install gcc@10
gcc@10: The x86_64 architecture is required for this software.
Error: gcc@10: An unsatisfied requirement failed this build.
I managed to install gcc and edit the makefile to find and use it. But finally I've got a compilation error:
(base) alexey@Alexeys-MacBook-Pro:~/Downloads/colord$ make
/opt/homebrew/bin/g++ -Wall -O3 -std=c++17 -static-libgcc -static-libstdc++ -pthread -I src/colord/../common/libs/zlib -I src/colord/libs/kmc_api -I src/colord/libs/edlib -I src/colord/libs/CLI11 -c src/colord/timer.cpp -o src/colord/timer.o
/opt/homebrew/bin/g++ -Wall -O3 -std=c++17 -static-libgcc -static-libstdc++ -pthread -I src/colord/../common/libs/zlib -I src/colord/libs/kmc_api -I src/colord/libs/edlib -I src/colord/libs/CLI11 -c src/colord/stats_collector.cpp -o src/colord/stats_collector.o
/opt/homebrew/bin/g++ -Wall -O3 -std=c++17 -static-libgcc -static-libstdc++ -pthread -I src/colord/../common/libs/zlib -I src/colord/libs/kmc_api -I src/colord/libs/edlib -I src/colord/libs/CLI11 -c src/colord/reads_sim_graph.cpp -o src/colord/reads_sim_graph.o
In file included from src/colord/kmer_filter.h:26,
from src/colord/reads_sim_graph.h:21,
from src/colord/reads_sim_graph.cpp:19:
src/colord/hs.h:21:10: fatal error: mmintrin.h: No such file or directory
21 | #include <mmintrin.h>
| ^~~~~~~~~~~~
compilation terminated.
make: *** [src/colord/reads_sim_graph.o] Error 1
It seems the problem is because of using SSE commands which are implemented only under x64/x86 architecture. I think a possible solution is sse2neon but I am not sure it's the best and universal solution.
Later I can check using of this tool under ARM Linux.