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Assembled Genomes Compressor
Where does the raduls library come from? I didn't see it mentioned in the README or elsewhere in the repo so I was hoping you could point me where I...
Hi Sebastian, Agnieszka, Heng, AGC looks great. I wanted to see if it'd work also on badly-assembled sequences, e.g. unitigs, and didn't get good compression ratios. Would you say the...
Hi I was having issues compiling agc using `make -f makefile.release agc` (to avoid the python binding), and ran into several errors about a missing reference to a clcok like...
Thanks again for this awesome tool! I'm trying to compress a large dataset of viral genomes, and sometimes we get updated genome sequences for an existing ID. I like that...
Fixes building agc with GCC 13 which currently fails because of a missing `#include ` in `src/core/defs.h` (see "Header dependency" in https://gcc.gnu.org/gcc-13/porting_to.html for the why).
Dear developers, I am writing to report a potential bug regarding the duplication error of a pair of the sample name and the contig name. BGZIP-compressed FASTA files will encounter...
Re: the brief [Twitter back-and-forth](https://twitter.com/sdeorowicz/status/1631680246196887552), it would be amazing if there were some reasonable presets for specific common contexts. Some that come to mind: * Viral Genomes * Bacterial Genomes...