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how to run KMC with assembly genome (fasta)

Open Aannaw opened this issue 2 years ago • 21 comments

hello I am confusion with the command for the kmc count kmer with assembly genome (fasta). I actually do not find an example. My command is kmc -k21 -ci0 -t40 -m20 -fa a.fasta ./tmp. No error is present but the program is clapsed. Looking forward with reply. Thanks very much.

Aannaw avatar Dec 14 '21 07:12 Aannaw