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Protein sequence

Open TahaAslani opened this issue 5 years ago • 2 comments

Can KMC count kmers for the protein sequences instead of nucleotides? Thanks

TahaAslani avatar Aug 20 '19 20:08 TahaAslani

Unfortunately, in the current version of KMC, it is not possible to count kmers for the protein sequences. Are you aware of any tool that is able to count k-mers for the protein sequences?

marekkokot avatar Aug 27 '19 06:08 marekkokot

Yes. MerCat does that: https://github.com/pnnl/mercat

TahaAslani avatar Aug 27 '19 14:08 TahaAslani