Claire Redin

Hi again, I've used bwa-mem So this could be an error from the alignment step? On Mon, Feb 21, 2022 at 11:38 AM Brent Pedersen ***@***.***> wrote: > what aligner...

Hi Brent, Thanks a lot for the comment. I've thus added an extra step to fix all DT fields from the bam header using 'accepted' biogo/hts DT formats, and it...

Thanks a ton! I figured that the exclusion bed file I used was corrupted (in case it's helpful for others). Now everything runs smoothly. Have a great day, Claire On...

Thanks for the heads up! I had tried to run annotate without the -gff argument for help but still providing the vcf input so it didn't show anything but an...