epicontacts
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Handling, Visualisation and Analysis of Epidemiological Contacts
Running the x_axis parameter in vis_epicontacts always gives me an error“Error in fix.by(by.x, x) : 'by'必需指定唯一有效的列”, even though I have converted the dates in the data to Date format. ...
The github URL is added to the description. This will give cran users awareness of the GitHub location. For an example see https://github.com/tidyverse/dplyr/blob/main/DESCRIPTION
When you run `devtools::check()`, you get the following warning and note that should probably be addressed: ``` ❯ checking S3 generic/method consistency ... WARNING as.igraph: function(x, ...) as.igraph.epicontacts: function(x) See...
Hi, I flow this post (https://www.reconlearn.org/post/real-time-response-3.html) and try to plot timed transmission trees using this code. `q
The website for epicontacts is sorely out-of-date. For example, the CRAN version has `edges_pal()` included in the documentation for colors, but it is missing on the website: http://www.repidemicsconsortium.org/epicontacts/reference/colors.html It becomes...
Because cases in the linelist who do not appear in the contacts dataframe with from as NA do not have their node attributes displayed, just their ID, it is necessary...
`NA` in contact IDs is treated as a single node, resulting in incorrect clustering. In the example below, `1 -> NA` and `NA -> 2` is interpreted as a single...
Reported by Bertrand Sudre during his time with the analytics cell of the EOC, DRC: ``` r library(outbreaks) library(epicontacts) attach(mers_korea_2015) str(mers_korea_2015) #> List of 2 #> $ linelist:'data.frame': 162 obs....
- NAs in all columns - missing ids in linelist - missing ids in contacts - clusters of known sizes - degrees of known sizes - unconnected cases - node...
This is based on the rOpenSci code reviews: https://devguide.ropensci.org/ @zkamvar and @finlaycampbell are assigned.