Rebecka Bergström

icon company Karolinska Institutet icon location Stockholm icon location Bioinformatician and PhD student in cancer genomics at Karolinska Institutet, Stockholm, Sweden.

Results 2 issues of Rebecka Bergström

Extract number of duplex reds supporting a variant

1 comment

Hi, Do you have a tool to extract the number of duplex reads supporting a specific variant from a consensus bam file containing both duplex and non-duplex reads? I saw...

question

Are multi-nucleotide and complex variants ignored?

2 comment

Hi, We use somaticseq to just merge variants from Mutect2 and HMF Tools SAGE (the latter as "arbitrary" vcf's), the classification module is not used currently. However we were missing...