Raúl RC

subject_QC: Sankey diagram of DWI appears to be incomplete (orange) but it's not

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* **What is the current behavior?** Even when the DWI was processed successfully, the Sankey diagram of DWI is orange (INCOMPLETE) * **Please provide the steps to reproduce and if...

* **What is the current behaviour?** *micapipe currently do not support this QC * **What is the motivation / use case for changing the behaviour?** It will improve the subject...

Add features to plotting.surface_plotting and plotting.colormaps

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- added views to the default views of surface_plotting - added colormaps

python requirements

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Could you please provide or point me to the python package versions to build a local environment?

DL+DiReCT fails on CPU only workstation

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Hello, I'm trying to run DL-DiReCT on a workstation with no CUDA, but 40 CPU Intel(R) Xeon(R) CPU E5-2630 v4 @ 2.20GHz. I think I'm getting the next error because...

Update Input Datatype Details and Fix Sorting Features on BIDS-Apps Page

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First of all, we’d like to thank you for the effort you’ve put into the new website; it looks fantastic. Our teams, Hippunfold and Micapipe, noticed that the “Status of...

False `MULTIPLE_INHERITABLE_FILES` error for distinct `_dwi` files with different entities

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I'm encountering a `MULTIPLE_INHERITABLE_FILES` error in a dataset that I believe complies with the BIDS Inheritance Principle. ## Example error ``` [ERROR] MULTIPLE_INHERITABLE_FILES Multiple files in a directory were found...

What is the current behavior? - The notebook plot_tutorial_02_context.ipynb no longer appears in the BrainStat documentation. - The notebook plot_tutorial_01_basics.ipynb is present but renders without any plots. Steps to reproduce...

Update regSynth to LAMAReg

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## Summary LAMAReg will become the **default cross-modality registration** in micapipe, replacing regSynth. - The `-regSynth` flag will be removed from the API (snake rules and bash micapipe). - No...

# Workflow update: proc_dwi and Structural Connectivity (SC) This issue collects proposed updates, improvements, and open questions related to DWI preprocessing `proc_dwi` and `SC` pipelines in micapipe. ## Atlas Integration...