Robrecht Cannoodt comments

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                                            Robrecht Cannoodt

Improve guessing of the mapping of dimred slots

To be clear, this PR only affects the code that tries to "guess" how AnnData's should be mapped to SCE/Seurat and back. If the user manually chooses how DRs should...

Do not copy items is mapping is empty vector `c()`

Make sure we: * Switch to using either lists or vectors to work the same way, or we switch to using either one of the other Options for notations: ##...

Do not copy items is mapping is empty vector `c()`

Or support something like tidyselect https://dplyr.tidyverse.org/reference/select.html

Do not copy items is mapping is empty vector `c()`

Let's go with TRUE / FALSE! * TRUE: Copy everything * FALSE: Copy nothing * Empty vectors / empty lists / NULL means the same as FALSE * Non-empty character...

Bump JamesIves/github-pages-deploy-action from 4.6.3 to 4.6.8

Let's just set this to v4 instead ^^

Error `NAs introduced by coercion to integer range` when reading large H5AD

We might be able to solve by switching to SparseArray when 32-bit indexing is not sufficient: ```r library(SparseArray) large_dims