SCORPIUS
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rcannood
Linear trajectory inference for single-cell RNA-seq
I am having an issue using SCORPIUS, I want to set my progression group to show my Seurat clusters and the trajectory line between them - I am getting this...
After installation of SCORPIUS and Seurat, I ran the code `vignette("seurat", package="SCORPIUS")` in an attempt to read one of the vignettes containing more elaborate examples, but there wasn't any vignette....
I am opening this issue as a notification because `SCORPIUS` is listed [here](https://cran.r-project.org/web/packages/Seurat/index.html) as a package that relies (depends/imports/suggests) on Seurat. As you may know, we recently released Seurat v5...
Hi, I was wondering whether you had compared SCORPIUS results using either the expression matrix for all genes or an expression matrix filtered for highly variable genes as input to...
Is there a way to change the color of the path in draw_trajectory_plot?
Hi, I am getting this error at the `extract_modules` step, which appears to be related to the maximum length of allowed vectors in R: https://stackoverflow.com/questions/42479854/merge-error-negative-length-vectors-are-not-allowed, https://github.com/alyssafrazee/polyester/issues/41, https://support.bioconductor.org/p/66401/ > "You are...
Hi, wonderful method (and the review article as well is superbly helpful!) - I was wondering if there might be plans to submit this package to Bioconductor and provide direct...
Hello. I'm following your vignette and I couldn't get past at the start. My seurat object is "**HCKDMISC**"  May I ask what should be done here?
Hi there, again, great tool! Few questions: - I wonder if one can use an alternative clustering approach, instead of k-means? is this [issue #3](https://github.com/rcannood/SCORPIUS/issues/3) relevant here? just want to...
