Rahul Pisupati

Thanks for this update @phue ! It looks great 🎉 I did try this and found some errors/fixes 1. Gives an error when few samples are single-end and others paired-end....

If I remember correctly, it is trying to do paired-end mapping with filename `null` since file path isnt present in the `samplesheet.csv`.

Hi ttriche, Did you find any way to fix this error?

Hi, I have run it with this command and it ended up giving me an error. > ~/Softwares/biscuit-0.1.4.20160330/bin/biscuit pileup -r ~/whole_genome_TAIR10/TAIR10_all.fa -i 36841_GCCAAT_C92VAANXX_1_20160229B_20160229.modified.bam > ##fileformat=VCFv4.1 > ##reference=/home/GMI/rahul.pisupati/whole_genome_TAIR10/TAIR10_all.fa > ##source=biscuitV0.1.3.20160324 >...

Yeah even I thought the same, I have the same headers from Arabidopsis, tair10. Dont know really why that was the case.

Hello jleluyer, try to rename headers in your reference fasta file with just chromosome names. it should work then!

I have added in a function (https://github.com/rbpisupati/statannotations/commit/53d40eed7efbeef8af66bfa1c59a5ad5dd827fc3). Idea is to add in the letter representation for Tukey's test. The function is very primitive, one need to fix/add it in main...