rbf22

installing on an intel Mac conda env create -f environment.yml Collecting package metadata (repodata.json): done Solving environment: | Found conflicts! Looking for incompatible packages. This can take several minutes. Press...

There is a really nice version of combat from the sva package that includes a reference batch. If this was added as a feature then you could perform your corrections...

Yes, this is definitely pandas >=2.2 that causes this error.

Maybe with your error you can give the suggestion mentioned here: https://github.com/theislab/scanpy/issues/650#issuecomment-499492569