Raymond Lee

Results 112 comments of Raymond Lee

GOID | Number of annotations | Status -- | -- | -- GO:1903478 | 0 EXP | x GO:1904670 | 0 EXP | x GO:0030037 | 7 EXP | https://github.com/geneontology/go-annotation/issues/4409...

part_of, yes, probably for gastro-intestinal system smooth muscle contraction.

> It seems like is_a to me, but part_of 'digestion' (via 'digestive system process'). I'm not totally sure, but I do think we should get more of this automatically from...

@pgaudet If I'm understanding it correctly, you're requesting to obsolete beta-glucoside transport, with replaced_by cellobiose transport (0 child/0 annotation). But cellubiose is a sub type of beta-glucoside and GO_0015759 has...

β-D-glucoside https://www.ebi.ac.uk/chebi/chebiOntology.do?chebiId=CHEBI:22798 **It is in chebi_ph7_3** We should change beta-glucoside to beta-D-glucoside used in LDs. (cellobiose https://www.ebi.ac.uk/chebi/chebiOntology.do?chebiId=CHEBI:17057 It looks like ia β-D-glucoside but not so classified in Chebi.)

If we obsolete beta-glucoside terms, I think we should merge up to the parent term, like GO:0042946 glucoside transport rather than to that of cellobiose.

> * for biosynthesis/catabolism: it's only used for catabolism, and looking at the annotation, it seems that what is being described is really the MF, ie which bond is being...

> We can fix the ChEBI to β-D-glucoside https://www.ebi.ac.uk/chebi/chebiOntology.do?chebiId=CHEBI:22798 and close this for now. That has been done. https://github.com/geneontology/go-ontology/commit/48dba3fffce8e17156f0ce6d129a4b890858fb4e Thanks.

Sorry, I've always wondered if there is a necessary and sufficient definition of neuroblast. In the worm, other than the germline, there is no self-renewing stem cell. Although some cells,...