amos

Results 37 comments of amos

@rmzelle Thank you. We will work on updating the view.

@wichne I will test this and report back.

@wichne tested with READ_ONE (223MB) and READ_TWO (246MB) compressed, it took about 20 mins.

@bsiranosian @wichne I will write a script we can both use to test. I will add it here. Cheers.

@jwframe28 Yes! that's where the bottleneck is. I will write the code and take your suggestions into consideration. Cheers.

> Re: is it possible there are issues when running jobs on an HPC? @nickp60 I have ran `rgi bwt` using serial method outlined here https://github.com/arpcard/rgi#running-rgi-on-compute-canada-serial-farm. > Re: Edit: after...

@ZoeHansen RGI now has an `auto_load` function. Can you try that instead of `load` as i'm thinking maybe one of the files is not formatted correctly. Try `rgi auto_load` and...

@feihongloveworld Yes, the mutation from this https://card.mcmaster.ca/ontology/43108 are not being predicted yet in RGI. We are working towards this. Cheers.

@justabit96 `rgi heatmap` only works with `jsons` from `rgi main` and not `rgi bwt`.