rania-o
rania-o
Hello, I used the dataprep command for my in vivo sample with a depth around (~9000 reads) and it worked fine :+1: `xpore dataprep --eventalign /nanopolish/output.eventalign.txt --out_dir results --readcount_min 20...
Hello, I'm using the nanopolish eventalign for direct RNA sample. I used this command : `nanopolish eventalign --reads pass_Psi0.fastq --bam psi0_sorted.bam --genome transcript_oligo.fasta --signal-index --scale-events --summary psi0_summary.txt --threads 32 >...
Hello, I'm using Nanocompore to compare between a modified sample and an IVT sample. I've already done the nanopolish collapse step and I got this in the log file (for...
Hello, I have some questions about the outputs or Epinano. I used the sum-error parameter and I would like to know if in order to consider a site "modified" it...
Hello, I used the dataprep command for my in vivo sample with a depth around (1400X, ~9000 reads) and it worked fine +1 xpore dataprep --eventalign /nanopolish/output.eventalign.txt --out_dir results --readcount_min...
Hello, Thanks for developing the tool. I was wandering if there is a way to get the gene name in the output matrix instead of the transcript_ID or the gene_ID...
# Issue Report ## Please describe the issue: Hello, We performed a sequencing run using the "Rapidkit SQK-RBK114-96", but we ended up finding the sequence adapter ([https://github.com/nanoporetech/dorado/blob/release-v0.9/dorado/utils/barcode_kits.cpp]) in our fastq...
Hello, I used modkit pileup with a bam basecalled with dorado model [email protected] and called for m5C, m6a, pseudou and inosine. I have two questions : - The first one...
Hi, I'm using modkit pileup and modkit motif search with bacterial samples (DNA). I'm trying to detect m6A modifications and known motifs for my species. The problem I'm facing is...
Hello, I recently tried the new model released by dorado v1.0.0 for direct RNA, everthing works good except that I don't have any results with modkit dmr pair, which surprised...