rania-o
rania-o
@malton-ont Thanks for your answer, I'll try to get the pod5 using this pi tag.
Hello @ArtRand I'm using modkit/0.4.0, should I use another version ?
Hi @ArtRand Thanks for your answer. You're right, the threshold for G was 1, but for the other bases/modifications the threshold was 0.7 or 0.8 as for the precedent analysis....
Actually, I just tried the new version of modkit, with the --mod-threshlod mod:0.0, and I got this warning while running modkit pileup: ` Threshold of 0 for mod code a...
Hello @ArtRand, Thanks for your reply. I also used the option` --assign-code` and it worked.
Hello @ArtRand Thanks for your reply. I used the sup model basecalling "[email protected]", and this is the command line : `dorado basecaller [email protected] $s4_rep3 --modified-bases 6mA > sample_sup_m6a.bam` And this...