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                                            Ramiro

[FEATURE] STAR handle gzipped files

I am trying to fix this, but I am stuck on this line: `def gzip = reads.getName().endsWith(".gz") ? "--readFilesCommand zcat" : ''` Nextflow stdout: │ │ │ │ ERROR ~...

[FEATURE] STAR handle gzipped files

> @ramirobarrantes could you link me to your updates to the module? I'm struggling without the rest of the module to know why that line is throwing an error 😅...

Issue installing alakazam

Got it! As easy as not using the install2.r but rather good old fashioned install.packages()!!! ``` # Base R image FROM rocker/rstudio:4.4 MAINTAINER Ramiro Barrantes RUN install2.r -e rmarkdown ggplot2...