ralanany

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How to get gzipped tab-separated-values (tabix file) from bedmethyl file generated by modkit, for down stream analysis by nanomethviz R package?

# Thank you for your reply, but in the package html, They mentioned, We currently support output from Nanopolish f5c Megalodon # the format output from nanopolish (mentioned below), Then...

How to get gzipped tab-separated-values (tabix file) from bedmethyl file generated by modkit, for down stream analysis by nanomethviz R package?

> I recently tried to implement direct import of modkit bedmethyl. Looking at your data, I don't think it quite lines up with my expected columns. Could you let me...

How to get gzipped tab-separated-values (tabix file) from bedmethyl file generated by modkit, for down stream analysis by nanomethviz R package?

Thank you Shians for your reply again, I used the recommended command, I used The input bam file, and the output is tsv, but still it is different from nanopolish...

How to annotate bedmethyl file with cpg name instead of chr name and position and How can I find the pvalue for association of the cpg with the phenotype?

Hi @ArtRand Thanks for your reply, Actually, I don't have table with the cpg name, What I am looking for is how to find the cpg name for each position...

How to annotate bedmethyl file with cpg name instead of chr name and position and How can I find the pvalue for association of the cpg with the phenotype?

> Hi @ArtRand Thanks for your reply, Actually, I don't have table with the cpg name, What I am looking for is how to find the cpg name for each...