Rahim Rajwani

Hello @lonphan @jinyu-ncbi, I am working on a compilation of various datasets for a data catalog purpose. I wanted to use Grafpop for ancestry predictions. However, many of them orignate...

Any suggestions on handling manifests with missing RefStrand and SourceSeq columns?

2

Hi, I am compiling a data catalog for my department where the data set span 27+ manifests which come from different times some of them pre-2009 era. Many of these...

Empty ALT genotypes?

1

Hello @jzieve I see some of the genotypes have empty ALT allele. This could be simply missing calls. But instead of using `.` or `N`, the field is simply empty....

Tool assumptions and behaviour

6

Hi @jzieve, As a fix to #78, I might need to use a different csv beadpool manifest version than the orignal manifest used to generate idat/gtc. Many of new manifests...

Hi @alexeigurevich Is it possible to get predicted fragmentation spectra for the compound that was used to do spectrum matching? I am thinking of two possible ways but still couldn't...