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                                            ragunyrasta

Using a GPU-capable version of sequence alignment (e.g. comer2) instead of hhblits

Unfortunately the HHBlits developers have told me that they lost funding to develop a GPU capable version. So I'm about to find out more about Comer2 and try. But in...

Using a GPU-capable version of sequence alignment (e.g. comer2) instead of hhblits

Glad that it helped. One thing to try: Set the number of cpus to a valid value in your run*.py script. When it runs hhblits, do a 'top' in your...