Seamus Ragan

Issue with CNVnator installation

2

I am having an issue identical to the closed issue #28 . I have sourced the root installation and tired the suggestion from the seqanswers link you found (http://seqanswers.com/forums/showthread.php?t=16665). When...

Error with variant-utils comparetwo: Structural variant type not handled: :NON_REF

2

I am trying to use the variant-utils comparetwo function to compare two gvcf files from our GATK pipeline. I have tried several iterations of files including converting to vcf using...