rachelss

Hoping for an undergrad to try this

Comparing BAMs. But keep in mind that mapping won't be identical every time so the files might not be the same and that might be ok. http://seqanswers.com/forums/showthread.php?t=17644 http://deeptools.readthedocs.io/en/latest/content/tools/bamCompare.html

The title of this merge request is Do Not Merge. Is that still true?

@BobLiterman will work on this (not sure why I can't assign)

Brown, JM, RC Thomson. in press. Bayes factors unmask highly variable information content, bias, and extreme influence in phylogenomic analyses. Systematic Biology

Currently requires _R1, but it's a variable so it's easily changed or could be specified by user

Runs ok on CentOS as far as I know. I assumed python was portable among OS.

Ask @BobLiterman

Yes we need a complete upgrade to python3. Python 2 is now officially on its way out.

I'm not sure. Can we use 3.6.3? What can we do to ensure backwards compatibility? Or to throw errors if someone is running an old version and there's a compatibility...