Rachel Schwartz comments

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                                            Rachel Schwartz

default value instead of np.nans for cooler matrix

can NaNs raise error messages? I'm getting the following warning, not sure if it's caused by missing bins or something else: WARNING:py.warnings:/usr/local/lib/python3.6/dist-packages/numpy/core/fromnumeric.py:2920: RuntimeWarning: Mean of empty slice. out=out, **kwargs) WARNING:py.warnings:/usr/local/lib/python3.6/dist-packages/numpy/core/_methods.py:85:...

Error with find_gene_modules. requires numeric/complex matrix/vector arguments

> @fjrossello Thank you very much for sharing this. May I ask you to provide more details for your analysis pipeline? Re-calculation PCA in monocle3 method (by @jgarces02) worked for...

Program error with output

Nope. I ended up using Juicer tools to generate a matrix and call TADs. Works much better! On Sun, Dec 15, 2019 at 5:05 PM AyushSemwal wrote: > I am...

ReadRDS and Seurat-object

Hi @maximilianh, did you end up using any of these workarounds? I am interested in wrangling something for the GB but I'm encountering this issue.