mrivis
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raamana
medical image visualization library and development toolkit
update mrivis docs to note that all my packages assume orientation is encoded correctly find ways not to assume it.
Extending `Collage` to accept a `N` volumes and layout N collages in the same figure! Class still under dev, to be finalized and tested
- SlicePicker from 4D volumes - e.g. to check alignment , or producing a collage
Right now, it only shows alignment-related visualizations. Add more visualizations for all features, including - Carpet - Collage - SlicePicker
- deriving from Carpet, create `FuncCarpet` with defaults tailored to most neuroimaging applications, such as taking tissue segmentation masks, default blurring on, etc - deriving from Carpet, create `DiffusionCarpet`, similar...
- composite layering of stats (as in visualqc) - mixing multiple variations of carpet (temporal derivatives etc) - exploiting multiple color channels to ingest useful info
- Add real world examples - show the effect of different number of ROIs - show the effect of different clustering metrics
- merge from #8 disappeared for some reason :) - dig it or merge it back in
- to unroll 4D data over the 4th dim, - optional input of ROI set or mask - option to cluster the rows (spatial/voxel-wise) and/or columns (time or gradients), -...
- 'middle' returning one middle slice from the views selected - option to select slices within an ROI (`in_roi='seg_image.nii'`)