mrivis

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mrivis

.. image:: http://joss.theoj.org/papers/10.21105/joss.00897/status.svg :target: https://doi.org/10.21105/joss.00897

.. image:: https://img.shields.io/pypi/v/mrivis.svg

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mrivis offers intuitive high-level classes for visualization of medical imaging data including:

• advanced classes to easily develop customizable visualizations of 3D and 4D images, such as Carpet(), SlicePicker(), Collage() and the like
• tools for comparison of spatial alignment of two 3D MRI scans (T1, T2, PET etc) using checkerboard plots and other comparison methods
• additional helper, convenience and utility scripts related to visualization

Full documentation for both visualization classes and alignment check tools is available at

https://raamana.github.io/mrivis/readme.html

A sample gallery of different ways to check alignment (just one of the many other features in mrivis) is shown below:

.. image:: docs/flyer_option_matrix.png

Full documentation https://raamana.github.io/mrivis/readme.html

Executable and interactive demo for the visualization classes:

.. image:: https://mybinder.org/badge.svg :target: https://mybinder.org/v2/gh/raamana/mrivis/master?filepath=docs%2Fexample_notebooks%2Fmrivis_demo_vis_classes.ipynb

Installation

.. code-block:: console

$ pip install mrivis

If you would like to use the export to GIF from SlicePicker, then install the imageio package as well via pip install imageio