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Conditional setting of `R_LIBS_USER`
Hello!
We have noticed that a recent change to setup-r-dependencies
, setting R_LIBS_USER
if unset, had downstream effects on actions run in the Bioconductor Docker container. For an example, see here, the explicit error is
Error in setwd(libdir) : cannot change working directory
due to the change in R_LIBS_USER
.
We are considering options (such as setting the R_LIBS_USER
in the container, which may also have an impact on users relying on the current default), but wanted to ask if you would be open to adding a flag to the action, to make it possible for the user to choose whether R_LIBS_USER
should be set if missing, or not.
cc @almahmoud
Thanks in advance!