qupath-extension-stardist icon indicating copy to clipboard operation
qupath-extension-stardist copied to clipboard

QuPath extension to run StarDist nucleus detection

Results 3 qupath-extension-stardist issues
Sort by recently updated
recently updated
newest added

See discussion at https://github.com/qupath/2022-qupath-hackathon/discussions/6

See https://forum.image.sc/t/qupath-run-stardist-on-annotations-created-by-tissue-classifier/67215/2 for details. Depending upon whether JTS internally optimizes things, the intersection calls [like this one](https://github.com/qupath/qupath-extension-stardist/blob/v0.3.0/src/main/java/qupath/ext/stardist/StarDist2D.java#L926) *could* be way more expensive that necessary. We should also consider using [`OverlayNG`](https://locationtech.github.io/jts/javadoc/org/locationtech/jts/operation/overlayng/OverlayNG.html)...

See https://forum.image.sc/t/stardist-in-qupath-normalization-issue/38912/13 for a discussion.