qupath-extension-stardist
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Detection in a complex ROI might be unreasonably slow
See https://forum.image.sc/t/qupath-run-stardist-on-annotations-created-by-tissue-classifier/67215/2 for details.
Depending upon whether JTS internally optimizes things, the intersection calls like this one could be way more expensive that necessary.
We should also consider using OverlayNG
- see:
- http://lin-ear-th-inking.blogspot.com/2020/06/jts-overlayng-noding-strategies.html
- http://lin-ear-th-inking.blogspot.com/2020/06/jts-overlayng-tolerant-topology.html