btrack

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[FEATURE REQUEST] Vector field to aid tracking

5

This tool is amazing! So easy to use, and fast! I would like to know if there is any possibility to add some speed vectors, specially for tracking in non-static...

henriquenunez

fixed centroid_type error for multichannel intensity_images

1

I had this change on my local clone but at some point it got overwritten by a change on the original repo so figured I should finally get round to...

nthndy

Expands on #378

paddyroddy

Hello, I encountered a bug when migrating from bTrack 0.6.3 to 0.6.4 in the method tracker.to_napari(). Before, I could get away with not setting the tracker volume as setting it...

remyeltorro

[BUG] Default config name is used when saving config from napari plugin

8

When exporting the config from the napari plugin, the default config name is used, which means it cannot be loaded until it has been renamed. ``` 167 if config_name in...

quantumjot

Upgrade pydantic

1

I've merged in latest changes as of 2023-08-09. Not working yet, but someone else can give this a go.

paddyroddy

Separate different steps by tabs

2

To use tabs to make it simpler and show other settings in tabs. E.g., [iacs-ipac-reader ](https://www.napari-hub.org/plugins/iacs-ipac-reader) that uses Qt widgets instead of napari's magic

dpshelio

I have some images where the associated segmentation may only feature one single segment/object in a frame. I need to extract the `intensity_image` as a part of the `properties` parameter...

nthndy

Use visual features in hypothesis generation

1

quantumjot

Extracting regionprops from multichannel image

2

When supplying `btrack.utils.segmentation_to_objects` with a **_multichannel_** image, an error is raised regarding the conversion of the `regionprops` table into dictionary format. This is because `regionprops` is confused by `use_weighted_centroid` and...

nthndy