pymzML

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Update dependency sphinx to v5.3.0

2

[](https://renovatebot.com) This PR contains the following updates: | Package | Change | Age | Adoption | Passing | Confidence | |---|---|---|---|---|---| | [sphinx](https://togithub.com/sphinx-doc/sphinx) ([changelog](https://www.sphinx-doc.org/en/master/changes.html)) | `==5.0.2` -> `==5.3.0` |...

renovate[bot]

This issue lists Renovate updates and detected dependencies. Read the [Dependency Dashboard](https://docs.renovatebot.com/key-concepts/dashboard/) docs to learn more. ## Open These updates have all been created already. Click a checkbox below to...

renovate[bot]

Issue using "TIC" with data set

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Trying to access and plot my total ion chromatogram is not working. It does not seem to recognise it for my data. I exported my data from mzmine 3, and...

backertix

Iterator reinitializes itself and the end of iteration leading to pointless re indexing.

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In `run.py:Reader.__next__ ` method the 'END' event triggers a re-opening of the file leading to another reindexing of a possibly very large file (if it contains no index). Since we...

arabidopsis

Feature/reprofiling gsmk

2

fu

Usage of "similarity_to()"

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**Describe the bug** Please help....I'm trying to use "similarity_to" method, however I got an issue like this. How can solve this issue? ---------------list elements checked complete(on 'main.py')-----------------   Spectrum...

bathtube

Mobility of Precursor of MS2 in data model

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**Is your feature request related to a problem? Please describe.** When I have an MS2 with ion mobility specified in the precursor area, its not propogated. Just a small snippet...

mwang87

access fileDescription

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I went through the documentation but didn't find how to access the information inside specific xml elements inside the mzml file, like for example What I'm doing now is accessing...

jonas87

Issue Averaging Two Spectra

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I am trying to average together multiple scans into a single summed spectrum, and I'm having issues with the add function. Perhaps I'm using it wrong, but here is an...

michaelmarty

Warning while building the docs

1

Greetings, a simple report to tell you that I get these warning when building the docs: ~/pymzml/plot.py:docstring of pymzml.plot.Factory.add:6: WARNING: Unexpected indentation. ~/pymzml/plot.py:docstring of pymzml.plot.Factory.add:15: WARNING: Unexpected indentation. Sincerely, Filippo

lopippo