Peter Rose

Anything saved on /tmp gets wiped out during reboot. So we need to find a better location for the installation instructions and install script.

* creating.png files * color coding by b-factor {'colorscheme': {'prop': 'b'}}

Move notebooks that use obsolete RCSB web-services to obsolete directory.

AnalysisException: 'No such struct field ac in provider, qualifier;'

On Windows installer is trying to run cmake and fails.

File "/Users/peter/GitRespositories/mmtf-pyspark/mmtfPyspark/interactions/structureToAtomInteractions.py", line 67, in __call__ interactions += interaction.get_pair_interactions_as_rows() File "/Users/peter/GitRespositories/mmtf-pyspark/mmtfPyspark/interactions/atomInteraction.py", line 201, in get_pair_interactions_as_rows self.calc_coordination_geometry() TypeError: calc_coordination_geometry() missing 1 required positional argument: 'maxInteraction'

Need a new sequence example that matched the new sample dataset.

I get the following error below (on Windows). I think it's because we using a different dataset. Take out the filter: .filter(Pisces(sequenceIdentity=40,resolution=3.0)) and see if that fixes the problem (empty...

StructureToBioassembly returns mmtf.api.mmtf_writer.MMTFEncoder, but should return mmtfPyspark.utils.mmtfStructure.MmtfStructure

Installation for Neomap hangs for Neo4j Desktop 1.4.1.46

6

**Describe the bug** Installation of Neomaps doesn't complete. **To Reproduce** Install the latest version of Neo4j Desktop 1.4.1.46 Paste https://registry.npmjs.org/neomap into the install text box Click install **Desktop (please complete...